Merge branch 'dev' into 'main'
v1.13-RC.1 See merge request !20
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- .gitlab-ci.yml 1 addition, 1 deletion.gitlab-ci.yml
- README.md 57 additions, 60 deletionsREADME.md
- Snakefile 1145 additions, 271 deletionsSnakefile
- config.yaml 26 additions, 12 deletionsconfig.yaml
- doc/Pan1c.documentation.json 67 additions, 0 deletionsdoc/Pan1c.documentation.json
- example/config_CICD.yaml 25 additions, 14 deletionsexample/config_CICD.yaml
- getApps.sh 2 additions, 2 deletionsgetApps.sh
- rules/tools.smk 52 additions, 0 deletionsrules/tools.smk
- runSnakemakeSLURM.sh 24 additions, 0 deletionsrunSnakemakeSLURM.sh
- scripts/Syri.figs_mm2.sh 11 additions, 5 deletionsscripts/Syri.figs_mm2.sh
- scripts/Syri.figs_wfm.sh 133 additions, 0 deletionsscripts/Syri.figs_wfm.sh
- scripts/VCF.stats_figs.py 332 additions, 0 deletionsscripts/VCF.stats_figs.py
- scripts/asm.pan1c_QC.py 159 additions, 0 deletionsscripts/asm.pan1c_QC.py
- scripts/chrGraphs.stats_aggregate.py 0 additions, 0 deletionsscripts/chrGraphs.stats_aggregate.py
- scripts/chrGraphs.stats_figs.py 359 additions, 0 deletionsscripts/chrGraphs.stats_figs.py
- scripts/chrInput.stats_compute.py 0 additions, 0 deletionsscripts/chrInput.stats_compute.py
- scripts/contig.pos_figs.R 10 additions, 3 deletionsscripts/contig.pos_figs.R
- scripts/core.stats_compute.py 0 additions, 0 deletionsscripts/core.stats_compute.py
- scripts/getPanacusHG.sh 1 addition, 1 deletionscripts/getPanacusHG.sh
- scripts/getTags.py 78 additions, 44 deletionsscripts/getTags.py
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