genotoul-bioinfo

We introduce jflow, a Workflow Management System (WMS), composed of Jquery plugins which can easily be embedded in any WEB application and a Python library providing all requested features to setup, run and monitor workflows.

jvenn is a plug-in for the jQuery Javascript library. It is a flexible tool, based upon the venny tool first developed by J.C Oliveros (Oliveros, J.C (2007) VENNY, An integrative tool for comparing lists with Venn Diagrams).

metagWGS is a workflow dedicated to the analysis of metagenomic data. It allows assembly, taxonomic annotation, and functional annotation of predicted genes. Since release 2.3, binning step with the possibility of cross-alignment is included. It has been developed in collaboration with several CATI BIOS4biol agents. Funded by Antiselfish Project (Labex Ecofect), ExpoMicoPig project (France Futur elevage) and SeqOccIn project (CPER - Occitanie Toulouse / FEDER), ATB_Biofilm funded by PNREST Anses, France genomique (ANR-10-INBS-09-08) and Resalab Ouest.

Repository containing input and output datasets to perform tests on metaGWGS

nG6

NGSPipelines integrates pipelines and user interfaces to help biologists to analyse data outputed from biological applications such as RNA-seq, sRNA-seq, Chip-Seq, BS-seq, and so on.

The pyrocleaner is intended to clean the reads included in the sff file in order to ease the assembly process.

mixKernel is a multiple kernel framework that allows to integrate multiple datasets of various types into a single analysis. The package is published on CRAN: https://cran.r-project.org/package=mixKernel

This project is dedicated to targets prediction of bacterial non-coding RNA and their visualisation through a web interface.

Provide tips to the platform users to use less resources.

The software enable to retrieve information (exon boundaries, mutation effect, known SNP...) about transcribed SNP. It's based on ensembl API.

Cours accessible à https://genotoul-bioinfo.pages.mia.inra.fr/use-nextflow-nfcore-course/