Commits · 6017f4a6a512b1b174d8150805810be3704a9732 · gryc / gryc-utilities · GitLab

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Feb 20, 2025
- Update the README.md. · 6017f4a6
  Hugo Devillers authored 3 weeks ago
  
  6017f4a6
- Rename tRNAscan2GFF3.pl to tRNAscanToGFF3.pl. · 6860b0af
  Hugo Devillers authored 3 weeks ago
  
  6860b0af
- Completed the featureIntronStat.pl script. · d4706111
  Hugo Devillers authored 3 weeks ago
  
  d4706111
Feb 19, 2025
- Add a script that computes stats on introns. · edc23d41
  Hugo Devillers authored 3 weeks ago
  
  edc23d41
Feb 12, 2025
- Fix and erreur in featureGrouper module importation. · bbea23ec
  Hugo Devillers authored 1 month ago
  
  bbea23ec
May 06, 2022
- Fix component counting. · 0f4e41b3
  Hugo Devillers authored 2 years ago
  
  0f4e41b3
- Fix argument value attribution. · c737ce6c
  Hugo Devillers authored 2 years ago
  
  c737ce6c
- Fix linkage types and add a option to discard single component scaffold in AGP. · 4c48bbe9
  Hugo Devillers authored 2 years ago
  
  4c48bbe9
May 05, 2022
- Add a script to convert scaffolded assemblies into contig set and agp file. · 154f4d5b
  Hugo Devillers authored 2 years ago
  
  154f4d5b
Mar 14, 2022
- Add a script to merge sequence together. · c5444d96
  Hugo Devillers authored 3 years ago
  
  c5444d96
Mar 12, 2022
- Fix: multiple locus_tag when translating CDS. · b2384302
  Hugo Devillers authored 3 years ago
  
  b2384302
- Merge branch 'master' of bitbucket.org:hdevillers/gryc-utilities · 707aee4d
  Hugo Devillers authored 3 years ago
  
  707aee4d
- Fix: return an error when editing a sequence with an unknown ID. · 0db3bb5d
  Hugo Devillers authored 3 years ago
  
  0db3bb5d
Feb 24, 2022
- Add a script to split fasta sequence on gaps (Ns). · 236298d5
  Hugo Devillers authored 3 years ago
  
  236298d5
Feb 13, 2022
- Add a script to add assembly_gap features. · a20e393a
  Hugo Devillers authored 3 years ago
  
  a20e393a
- Change tRNAsan version. · 12d89486
  Hugo Devillers authored 3 years ago
  
  12d89486
Jan 17, 2022
- Fix and complete documentation of scripts (WIP). · 999d8990
  Hugo Devillers authored 3 years ago
  
  999d8990
Jan 15, 2022
- Add a script for gap statistics. · b5b71d3f
  Hugo Devillers authored 3 years ago
  
  b5b71d3f
Jan 13, 2022
- Add a module to create feature and finish the script to add sources. · 18d6ce31
  Hugo Devillers authored 3 years ago
  
  18d6ce31
- Add a script to add the source feature of a sequence. · fb774771
  Hugo Devillers authored 3 years ago
  
  fb774771
- Exclute unsure feature from Gryc scripts. · f4db2205
  Hugo Devillers authored 3 years ago
  
  f4db2205
Jan 12, 2022
- Fix bad rules for translation table 3. · 1297e1b5
  Hugo Devillers authored 3 years ago
  
  1297e1b5
Dec 26, 2021
- Fix: syntaxe error in chromosomeCompare.pl script. · 6c6f4407
  Hugo Devillers authored 3 years ago
  
  6c6f4407
- Fix: missing dependency (JSON). · 538fff15
  Hugo Devillers authored 3 years ago
  
  538fff15
Apr 28, 2021
- Accept scaffolds without annotations. · 49c50229
  Hugo Devillers authored 3 years ago
  
  49c50229
Jan 25, 2021
- Add a tool to compare two annotations. · 82187842
  Hugo Devillers authored 4 years ago
  
  82187842
- Consider locus_tag to build hierarchy (instead of location). · 79443fad
  Hugo Devillers authored 4 years ago
  
  79443fad
- Add tranlastion code 11 (standard Bacteria). · 67bc2f1a
  Hugo Devillers authored 4 years ago
  
  67bc2f1a
Oct 16, 2020
- Fix: Save sequence description when editing it. · d247829f
  Hugo Devillers authored 4 years ago
  
  d247829f
Oct 02, 2020
- Manage complexe translation with exceptions and degenerated nucleotides. · 9be9ccba
  Hugo Devillers authored 4 years ago
  
  9be9ccba
Oct 01, 2020
- Add IUPAC nucleotide codes when computing translation. · 2fbbc3a9
  Hugo Devillers authored 4 years ago
  
  2fbbc3a9
Sep 28, 2020
- Add lib/script to compare annotations (WIP). · 1cb0d90f
  Hugo Devillers authored 4 years ago
  
  1cb0d90f
- Add a script that prints features/qualifiers used in an annotation. · 04ee486d
  Hugo Devillers authored 4 years ago
  
  04ee486d
Sep 23, 2020
- Manage regulatory features. · ece69450
  Hugo Devillers authored 4 years ago
  
  ece69450
- Fix an print issue for feature from other type. · b251ef48
  Hugo Devillers authored 4 years ago
  
  b251ef48
Jul 29, 2020
- Add a script that check qualifiers. · 955d9607
  Hugo Devillers authored 4 years ago
  
  955d9607
Jul 27, 2020
- Add a script to add qualifier in a set of features. · ca42cf5d
  Hugo Devillers authored 4 years ago
  
  ca42cf5d
Jul 24, 2020
- Consider repeat_region as possible locus. · 538e5cd3
  Hugo Devillers authored 4 years ago
  
  538e5cd3
Jul 07, 2020
- Add a script to compare chromosome annotations. · 68c8c2ae
  Hugo Devillers authored 4 years ago
  
  68c8c2ae
Jun 19, 2020
- Add GFF3 flat files, regulatory level and count features. · a766f9a7
  Hugo Devillers authored 4 years ago
  
  a766f9a7