Remove equals overriding of BioEntity and protects creation of BioParticipant (!6) · Merge requests · metexplore / met4j

Merged Ludovic Cottret requested to merge EntityEqualityAndProtectedParticipants into develop 3 years ago

Jan 24, 2022
- Merge branch 'develop' into 'EntityEqualityAndProtectedParticipants' · faebfe55
  Ludovic Cottret authored 3 years ago
  
  # Conflicts: # met4j-io/src/main/java/fr/inrae/toulouse/metexplore/met4j_io/tabulated/attributes/AbstractSetAttributesFromFile.java # met4j-io/src/main/java/fr/inrae/toulouse/metexplore/met4j_io/tabulated/attributes/SetBoundsFromFile.java # met4j-io/src/test/java/fr/inrae/toulouse/metexplore/met4j_io/tabulated/attributes/SetBoundsFromFileTest.java
  faebfe55
- Refactoring et test de Tab2BioNetwork · b54bce02
  lcottret authored 3 years ago
  
  b54bce02
- Refactoring and test for BioNetwork2Tab · fdf21fd1
  lcottret authored 3 years ago
  
  fdf21fd1
- test setAttributes · 15d2a574
  lcottret authored 3 years ago
  
  15d2a574
- SetPathwaysFromFile Test · da80d2a3
  lcottret authored 3 years ago
  
  da80d2a3
- refactoring SetAttributes · a9a420b4
  lcottret authored 3 years ago
  
  Creation of EntityType enum
  a9a420b4
- REfactoring SetAttributes and test SetGprs · 9f9291a0
  lcottret authored 3 years ago
  
  9f9291a0
- Improve and test SetFormulasFromFile · ad44d18d
  lcottret authored 3 years ago
  
  ad44d18d
- Count the number of columns by the number of tabulations · 798b2cda
  lcottret authored 3 years ago
  
  798b2cda
- New method to check metabolite formula · 900c830a
  lcottret authored 3 years ago
  
  900c830a
- Tests SetECsFromFile · 6fd63b19
  lcottret authored 3 years ago
  
  6fd63b19
- Method to check EC number · 8f29bd84
  lcottret authored 3 years ago
  
  8f29bd84
- Refactoring SetAttributes · fdf3780b
  lcottret authored 3 years ago
  
  fdf3780b
- Test for SetChargesFromFile · bf20b563
  lcottret authored 3 years ago
  
  bf20b563
- Refactoring AbstractSetAttributesFromFile · 4576931c
  lcottret authored 3 years ago
  
  4576931c
- Debug and test SetBoundsFromFile · a6564dde
  lcottret authored 3 years ago
  
  a6564dde
- Extract method for parsing line · 90ad4bf6
  lcottret authored 3 years ago
  
  90ad4bf6
Jan 21, 2022
- public methods for affecting reaction or enzyme from existing participants · 61cdad30
  lcottret authored 3 years ago
  
  61cdad30
- Changes due to new equality constraints on entities · 9a35cf8b
  lcottret authored 3 years ago
  
  9a35cf8b
- Constructor protected · f580a73e
  lcottret authored 3 years ago
  
  f580a73e
- constructor protected · 795a691e
  lcottret authored 3 years ago
  
  795a691e
- methods involving BioParticipant are now protected · 5f7f9640
  lcottret authored 3 years ago
  
  5f7f9640
- Remove ReactantAttributes · def5df81
  lcottret authored 3 years ago
  
  def5df81
Jan 20, 2022
- resolve conflicts · 989dd410
  lcottret authored 3 years ago
  
  989dd410
- Fields of BioParticipant and BioReactant unmodifiable · caaddbf2
  lcottret authored 3 years ago
  
  caaddbf2
- Add reactant and enzymeparticipant in the network fields · 5ffb3db9
  lcottret authored 3 years ago
  
  5ffb3db9
- id is now a concatenation of the entity id and the quantity and the cpt · e2f708f3
  lcottret authored 3 years ago
  
  e2f708f3
- The id is now a concatenation of the entity id and the quantity · afbeb00b
  lcottret authored 3 years ago
  
  afbeb00b
- Constructor with an id · 6633500e
  lcottret authored 3 years ago
  
  6633500e
- Remove equals overriding · 22b90c3f
  lcottret authored 3 years ago
  
  Two bioentity were equals if they had the same id. Now, the two objects must be equal.
  22b90c3f
- Checks if the id already exists when adding an entity in a BioCollection · fe97676c
  lcottret authored 3 years ago
  
  fe97676c

Remove equals overriding of BioEntity and protects creation of BioParticipant

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