bmc_jvenn.bib

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@BOOK{Edwards2004,
  title = {Cogwheels of the Mind: The Story of Venn Diagrams.},
  publisher = {Johns Hopkins University Press},
  year = {2004},
  author = {Anthony William Fairbank Edwards},
  address = {Baltimore}
}

@ARTICLE{Aravindraja2013,
  author = {Chairmandurai Aravindraja and Dharmaprakash Viszwapriya and Shunmugiah
	Karutha Pandian},
  title = {Ultradeep 16S rRNA Sequencing Analysis of Geographically Similar
	but Diverse Unexplored Marine Samples Reveal Varied Bacterial Community
	Composition},
  journal = {PLOS one},
  year = {2013}
}

@ARTICLE{Bianchia2013,
  author = {Laura Bianchia and Assunta Gagliardi and Giovanna Campanella and Claudia Landi and
	Anna Capaldo and Anna Carleo and Alessandro Armini and Vincenzo De Leo and Paola Piomboni and 
	Riccardo Focarelli and Luca Bini},
  title = {A methodological and functional proteomic approach of human follicular
	fluid en route for oocyte quality evaluation},
  journal = {Journal of Proteomics},
  year = {2013},
  volume = {90},
  pages = {61-76}
}

@ARTICLE{Dillies2012,
  author = {Marie-Agnès Dillies and Andrea Rau and Julie Aubert and Christelle 
Hennequet-Antier and Marine Jeanmougin and Nicolas Servant and Céline Keime and 
Guillemette Marot and David Castel and Jordi Estelle and Gregory Guernec and 
Bernd Jagla and Luc Jouneau and Denis Laloë and Caroline Le Gall and Brigitte 
Schaëffer and Stéphane Le Crom and Mickaël Guedj and Florence Jaffrézic and on 
behalf of The French StatOmique Consortium},
  title = {A comprehensive evaluation of normalization methods for Illumina 
high-throughput RNA sequencing data analysis},
  journal = {Briefings in Bioinformatics},
  year = {2012}
}

@ARTICLE{DeuPons2014,
  author = {Jordi Deu-Pons and Michael P Schroeder and Nuria Lopez-Bigas},
  title = {jHeatmap: an interactive heatmap viewer for the web},
  journal = {Bioinformatics},
  year = {2014}
}

@ARTICLE{Hulsen2008,
  author = {Tim Hulsen and Jacob de Vlieg and Wynand Alkema},
  title = {BioVenn a web application for the comparison and visualization of
	biological lists using area-proportional Venn diagrams},
  journal = {BMC Genomics},
  year = {2008},
  volume = {9},
  pages = {488}
}

@ARTICLE{Bronwen2012,
  author = {Bronwen Martin and Wayne Chadwick and Tie Yi and Sung-Soo Park and Daoyuan Lu 
    and Bin Ni and Shekhar Gadkaree and Kathleen Farhang and Kevin G. Becker and Stuart Maudsley},
  title = {VENNTURE-A Novel Venn Diagram Investigational Tool for Multiple 
  	Pharmacological Dataset Analysis },
  journal = {PLoS ONE},
  year = {2012}
}

@ARTICLE{Lopes2010,
  author = {Christian Lopes and Max Franz and Farzana Kazi and Sylva Donaldson
	and Quaid Morris and Gary Bader},
  title = {Cytoscape Web: an interactive web-based network browser},
  journal = {Bioinformatics},
  year = {2010}
}

@ARTICLE{Mariette2012,
  author = {J\'{e}r\^{o}me Mariette and Fr\'{e}d\'{e}ric Escudie and Nicolas
	Allias and G\'{e}rald Salin and C\'{e}line Noirot and Sylvain Thomas
	and Christophe Klopp},
  title = {NG6: Integrated next generation sequencing storage and processing
	environment},
  journal = {BMC Genomics},
  year = {2012}
}

@article{Westesson01032013,
	author = {Westesson Oscar and Skinner Mitchell and Holmes Ian}, 
	title = {Visualizing next-generation sequencing data with JBrowse},
	volume = {14}, 
	number = {2}, 
	pages = {172-177}, 
	year = {2013}, 
	doi = {10.1093/bib/bbr078}, 
	abstract ={JBrowse is a web-based genome browser, allowing many sources of data to be visualized, interpreted and navigated in a coherent visual framework. JBrowse uses efficient data structures, pre-generation of image tiles and client-side rendering to provide a fast, interactive browsing experience. Many of JBrowse's design features make it well suited for visualizing high-volume data, such as aligned next-generation sequencing reads.}, 
	URL = {http://bib.oxfordjournals.org/content/14/2/172.abstract}, 
	eprint = {http://bib.oxfordjournals.org/content/14/2/172.full.pdf+html}, 
	journal = {Briefings in Bioinformatics} 
}

@OTHER{Mariette,
  author = {J\'{e}r\^{o}me Mariette and C\'{e}line Noirot and Ibounyamine Nabihoudine
	and Philippe Bardou and Claire Hoede and Anis Djari and C\'{e}dric
	Cabau and Christophe Klopp},
  journal = {PLOS one},
  year = {2014},
  URL = {http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0096821}, 
  title = {RNAbrowse: RNA-seq de novo assembly results browser}
}

@ARTICLE{SanClemente,
  author = {Helene San Clemente and Elisabeth Jamet},
  journal = {Database},
  note = {in press},
  title = {WallProtDB, a database resource for plant cell wall proteomics},
  year = {2014}
}

@ARTICLE{Venn1880,
  author = {John Venn},
  title = {On the Diagrammatic and Mechanical Representation of Propositions
	and Reasonings.},
  journal = {Philosophical Magazine and Journal of Science},
  year = {1880},
  volume = {9},
  pages = {1-18}
}

@OTHER{canvasxpress,
  title = {The canvasxpress venn diagram functionalities.},
  url = {http://canvasxpress.org/venn.html}
}

@OTHER{googleAPI,
  title = {The Google chart API.},
  url = {https://developers.google.com/chart/}
}

@OTHER{jquery,
  title = {The write less, do more javascript library},
  url = {http://jquery.com/}
}

@OTHER{venny,
  author = {Juan Oliveros},
  title = {An interactive tool for comparing lists with Venn Diagrams.},
  url = {http://bioinfogp.cnb.csic.es/tools/venny/index.html},
  year = {2007}
}

@OTHER{RVennDiagram,
  author = {Hanbo Chen},
  year = {2013},
  title = {VennDiagram: Generate high-resolution Venn and Euler plots.},
  url = {http://cran.r-project.org/web/packages/VennDiagram/index.html}
}