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Merge branch 'devel' into 'master'
V2.4 Add coassembly and replace bin refinement with binette See merge request !25
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- README.md 8 additions, 7 deletionsREADME.md
- assets/hifi_multiqc_config.yaml 92 additions, 0 deletionsassets/hifi_multiqc_config.yaml
- assets/multiqc/barplot_bin_size_header.txt 1 addition, 1 deletionassets/multiqc/barplot_bin_size_header.txt
- assets/multiqc_config.yaml 9 additions, 4 deletionsassets/multiqc_config.yaml
- assets/sr_multiqc_config.yaml 107 additions, 0 deletionsassets/sr_multiqc_config.yaml
- bin/Filter_contig_per_cpm.py 0 additions, 95 deletionsbin/Filter_contig_per_cpm.py
- bin/Quantification_clusters.py 0 additions, 196 deletionsbin/Quantification_clusters.py
- bin/Rename_contigs_and_genes.py 0 additions, 166 deletionsbin/Rename_contigs_and_genes.py
- bin/add_info_to_bin_stat.py 3 additions, 3 deletionsbin/add_info_to_bin_stat.py
- bin/aln_to_tax_affi.py 37 additions, 34 deletionsbin/aln_to_tax_affi.py
- bin/bin_refinement.sh 0 additions, 549 deletionsbin/bin_refinement.sh
- bin/bins_per_sample_summarize.py 54 additions, 45 deletionsbin/bins_per_sample_summarize.py
- bin/cd_hit_produce_table_clstr.py 50 additions, 27 deletionsbin/cd_hit_produce_table_clstr.py
- bin/db_versions.py 15 additions, 7 deletionsbin/db_versions.py
- bin/filter_contig_per_cpm.py 130 additions, 0 deletionsbin/filter_contig_per_cpm.py
- bin/filter_diamond_hits.py 2 additions, 3 deletionsbin/filter_diamond_hits.py
- bin/format_bins_stat_to_multiqc.py 2 additions, 0 deletionsbin/format_bins_stat_to_multiqc.py
- bin/merge_abundance_and_functional_annotations.py 34 additions, 34 deletionsbin/merge_abundance_and_functional_annotations.py
- bin/merge_annotations.py 288 additions, 0 deletionsbin/merge_annotations.py
- bin/merge_contig_quantif_perlineage.py 12 additions, 13 deletionsbin/merge_contig_quantif_perlineage.py
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